GSoC/GCI Archive
Google Summer of Code 2011 Genome Informatics

Reactome and Bioconductor Integration Proposal

by Efrain for Genome Informatics

Here I propose to create a Reactome R package for the purposes of pathway enrichment analysis. The process of pathway analysis can be greatly enhanced with the integration of existing Bioconductor packages and the implementation of the R statistical programming language. The deliverables expected by this project would include a Reactome R library with a pathway enrichment analysis package, R-based pathway diagrams visualization function, Vignettes, and User guide documents.